Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2014Protein IcmB (DotO). (1007 aa)    
Predicted Functional Partners:
Lrub_2009
Protein IcmE (DotG).
 
 0.964
Lrub_2007
Protein IcmL (DotI).
 
   
 0.928
Lrub_2008
IcmK protein.
 
   
 0.919
icmP
IcmP protein.
 
   
 0.913
Lrub_2003
Protein IcmO (DotL).
 
  
 0.856
Lrub_0701
Hypothetical protein.
 
 
 0.854
Lrub_2005
Protein IcmL (DotI).
 
   
 0.841
lvhB3
Type IV secretion system protein VirB3.
  
 
 0.836
Lrub_0700
Hypothetical protein.
  
 
 0.828
Lrub_0698
Hypothetical protein.
 
 0.826
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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