Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2016IcmF. (975 aa)    
Predicted Functional Partners:
Lrub_2017
IcmH (DotU).
 
 
 0.991
cpxR
Transcriptional regulatory protein CpxR.
      
 0.839
Lrub_2009
Protein IcmE (DotG).
 
   
 0.820
lvrA
Legionella vir region protein.
  
     0.767
Lrub_1832
Protein LvrA.
  
     0.749
Lrub_1702
Putative membrane protein YdgA-like protein.
  
     0.747
Lrub_2606
Cysteine protease.
  
     0.740
dotC
Defect in organelle trafficking lipoprotein DotC.
  
   
 0.728
Lrub_0298
DotA.
  
     0.716
Lrub_1566
Protein-tyrosine phosphatase.
  
     0.715
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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