Lrub_2017 protein (Legionella rubrilucens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Lrub_2017

IcmH (DotU). (261 aa)

Predicted Functional Partners:

Lrub_2016

0.977

Lrub_2009

0.752

lvrA

0.728

Lrub_1832

0.699

Lrub_1702

0.629

pagP

0.627

Lrub_0298

0.613

Lrub_2606

0.611

Lrub_0710

0.588

Lrub_1726

0.586

Your Current Organism:

Legionella rubrilucens

NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lrub_0298	Lrub_0710	Lrub_0298	Lrub_0710	DotA.	Putative prophage repressor CI-like protein.	0.554
Lrub_0298	Lrub_1702	Lrub_0298	Lrub_1702	DotA.	Putative membrane protein YdgA-like protein.	0.757
Lrub_0298	Lrub_1726	Lrub_0298	Lrub_1726	DotA.	Cell division protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.	0.590
Lrub_0298	Lrub_1832	Lrub_0298	Lrub_1832	DotA.	Protein LvrA.	0.747
Lrub_0298	Lrub_2009	Lrub_0298	Lrub_2009	DotA.	Protein IcmE (DotG).	0.782
Lrub_0298	Lrub_2016	Lrub_0298	Lrub_2016	DotA.	IcmF.	0.716
Lrub_0298	Lrub_2017	Lrub_0298	Lrub_2017	DotA.	IcmH (DotU).	0.613
Lrub_0298	Lrub_2606	Lrub_0298	Lrub_2606	DotA.	Cysteine protease.	0.762
Lrub_0298	lvrA	Lrub_0298	Lrub_0709	DotA.	Legionella vir region protein.	0.764
Lrub_0710	Lrub_0298	Lrub_0710	Lrub_0298	Putative prophage repressor CI-like protein.	DotA.	0.554
Lrub_0710	Lrub_1702	Lrub_0710	Lrub_1702	Putative prophage repressor CI-like protein.	Putative membrane protein YdgA-like protein.	0.562
Lrub_0710	Lrub_1726	Lrub_0710	Lrub_1726	Putative prophage repressor CI-like protein.	Cell division protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.	0.580
Lrub_0710	Lrub_1832	Lrub_0710	Lrub_1832	Putative prophage repressor CI-like protein.	Protein LvrA.	0.527
Lrub_0710	Lrub_2009	Lrub_0710	Lrub_2009	Putative prophage repressor CI-like protein.	Protein IcmE (DotG).	0.647
Lrub_0710	Lrub_2016	Lrub_0710	Lrub_2016	Putative prophage repressor CI-like protein.	IcmF.	0.696
Lrub_0710	Lrub_2017	Lrub_0710	Lrub_2017	Putative prophage repressor CI-like protein.	IcmH (DotU).	0.588
Lrub_0710	Lrub_2606	Lrub_0710	Lrub_2606	Putative prophage repressor CI-like protein.	Cysteine protease.	0.637
Lrub_0710	lvrA	Lrub_0710	Lrub_0709	Putative prophage repressor CI-like protein.	Legionella vir region protein.	0.882
Lrub_0710	pagP	Lrub_0710	Lrub_2698	Putative prophage repressor CI-like protein.	Lipid A palmitoyltransferase PagP precursor; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.	0.540
Lrub_1702	Lrub_0298	Lrub_1702	Lrub_0298	Putative membrane protein YdgA-like protein.	DotA.	0.757