Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
plaBPhospholipase. (474 aa)    
Predicted Functional Partners:
rssA
Esterase of the alpha-beta hydrolase superfamily protein.
  
  
  0.772
Lrub_1540
Acid sphingomyelinase-like phosphodiesterase.
  
  
  0.771
bcp
Acetylpolyamine aminohydrolase.
  
     0.770
Lrub_0540
L-gulono-gamma-lactone oxidase.
  
     0.757
Lrub_2824
Chitinase.
  
     0.753
chiA
Chitinase A precursor.
  
     0.750
Lrub_1910
Coiled-coil protein.
  
     0.749
Lrub_0512
Potassium efflux system KefA.
 
     0.735
Lrub_1604
Tyrosine phosphatase II superfamily protein.
  
  
  0.733
Lrub_1587
Phospholipase/lecithinase/hemolysin.
  
   
 0.703
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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