STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comFCompetence protein ComF. (229 aa)    
Predicted Functional Partners:
dprA
DNA processing enzyme DprA.
 
 
 0.916
comA
DNA uptake/competence protein ComA.
 
  
 0.897
comM_1
Competence related protein ComM.
 
  
 0.817
Lrub_0189
GGDEF domain-containing sensory box protein.
  
  
 0.772
Lrub_1459
Regulatory protein (GGDEF and EAL domains).
  
  
 0.772
stuC_1
Sensor histidine kinase.
  
  
 0.765
wzt
ABC transporter of LPS O-antigen.
   
    0.721
Lrub_2657
Hypothetical protein; Belongs to the UPF0102 family.
 
    0.684
bioC
Biotin synthase; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.
  
  
 0.620
Lrub_0168
Sensory box protein.
  
    0.598
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.