STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2045Sterol desaturase-related protein. (411 aa)    
Predicted Functional Partners:
Lrub_0482
Squalene and phytoene synthase.
  
 0.823
Lrub_2660
Alkane monooxygenase.
 
 
 0.807
idi
Isopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
  
 0.790
Lrub_2340
Hypothetical protein.
   
 0.741
Lrub_2793
Putative inner membrane protein.
 
     0.731
bioI
Biotin biosynthesis cytochrome P450.
  
 0.730
Lrub_2046
Phenylalanine-4-hydroxylase.
 
     0.690
pksG
Polyketide biosynthesis 3-hydroxy-3-methylglutaryl-ACP synthase PksG.
   
  
 0.630
Lrub_2288
Flavin containing monooxygenase.
 
     0.607
Lrub_0189
GGDEF domain-containing sensory box protein.
   
    0.555
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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