STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2047Response regulator GacA. (219 aa)    
Predicted Functional Partners:
gacS/letS
Transmission sensor LetS.
 
 
 0.991
Lrub_1872
Sensory box histidine kinase/response regulator.
 
 0.976
Lrub_0131
Regulatory protein (GGDEF and EAL domains).
  
 0.966
stuC_1
Sensor histidine kinase.
 
 0.956
Lrub_0166
Sensory box histidine kinase/response regulator.
 
 0.930
Lrub_0394
Sensor histidine kinase.
 
 
 0.903
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
     
 0.838
smc_4
Chromosome partition protein Smc.
   
 0.806
Lrub_2049
GGDEF domain-containing sensory box protein.
 
 0.747
Lrub_2068
Regulatory protein (GGDEF and EAL domains).
  
 0.741
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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