Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lrub_2074Acid phosphatase, class B. (226 aa)    
Predicted Functional Partners:
Lrub_2340
Hypothetical protein.
  
     0.665
Lrub_1727
Hypothetical protein; Belongs to the UPF0235 family.
  
     0.616
Lrub_2076
Cysteine desulfurase.
       0.616
Lrub_2078
ABC transporter permease.
       0.616
sufS
Selenocysteine lyase, PLP-dependent; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.616
nifU
Nitrogen fixation protein NifU.
       0.616
Lrub_2081
Metal-sulfur cluster biosynthetic enzyme.
       0.616
Lrub_2077
ATP transporter ATP- binding protein.
       0.603
poxA
lysyl-tRNA synthetase.
       0.531
Lrub_1666
Hypothetical protein.
  
     0.517
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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