Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2086Hypothetical protein. (174 aa)    
Predicted Functional Partners:
Lrub_2085
Recombinase B.
       0.875
Lrub_2087
Hypothetical protein.
       0.862
Lrub_2083
Nucleoside-diphosphate sugar epimerase.
       0.728
Lrub_2084
NAD-dependent epimerase/dehydratase.
       0.728
uptC
Type II secretion system protein.
       0.575
Lrub_2089
Hypothetical protein.
       0.464
Lrub_2090
Hypothetical protein.
       0.464
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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