STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilA_3Type IV pilus assembly protein PilA; Belongs to the N-Me-Phe pilin family. (136 aa)    
Predicted Functional Partners:
pilE_1
Type-IV pilin.
 
  
 0.792
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
   
 0.679
Lrub_1177
Type IV pilus biogenesis protein PilO.
  
     0.539
pilE_2
Tfp pilus assembly protein, major type IV pilin class A.
  
 
  0.528
Lrub_0567
Type IV pre-pilin.
  
   
 0.522
pilA_2
Type IV pilus assembly protein PilA; Belongs to the N-Me-Phe pilin family.
 
    
0.517
Lrub_1145
Tfp pilus assembly protein PilW.
  
   
 0.492
pilN
Tfp pilus assembly protein PilN.
  
   
 0.486
Lrub_1146
Pre-pilin leader sequence (pilV).
  
   
 0.475
pilM
Tfp pilus assembly protein, ATPase PilM.
 
   
 0.455
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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