Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2164Hypothetical protein. (198 aa)    
Predicted Functional Partners:
Lrub_2163
Hypothetical protein.
       0.842
petC_2
Cytochrome b6-f complex iron-sulfur subunit.
       0.779
Lrub_2166
Integral membrane protein.
       0.777
Lrub_2165
Oxidoreductase.
       0.773
Lrub_0280
Type II/III secretion system protein.
  
     0.693
gacS/letS
Transmission sensor LetS.
     
 0.691
Lrub_2171
AAA domain (dynein-related subfamily).
  
     0.666
Lrub_1051
IcmL-like protein.
  
    0.646
Lrub_2721
Outer membrane efflux protein.
  
     0.646
iraA
Small-molecule methyltransferase IraA.
  
     0.633
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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