STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2171AAA domain (dynein-related subfamily). (2164 aa)    
Predicted Functional Partners:
Lrub_0701
Hypothetical protein.
  
     0.757
aaeB
P-hydroxybenzoic acid efflux pump subunit AaeB.
  
     0.737
bchD
Magnesium-chelatase 60 kDa subunit; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
 
 0.736
Lrub_2164
Hypothetical protein.
  
     0.666
Lrub_1357
Sensor histidine kinase/response regulator LuxN.
  
     0.646
Lrub_2313
Hypothetical protein.
 
     0.645
fabA
(3R)-hydroxymyristoyl-ACP dehydratase.
  
     0.641
traA_1
Conjugal transfer protein TraA.
 
     0.610
Lrub_1051
IcmL-like protein.
  
     0.589
lvhB_6
Vir protein.
  
     0.562
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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