Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yghDPutative general secretion pathway protein YghD. (156 aa)    
Predicted Functional Partners:
Lrub_2173
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.984
lspJ
Type II secretory pathway protein LspJ.
 
  
 0.830
lspK
Type II secretory pathway protein LspK.
 
  
 0.828
lspI
Type II secretory pathway protein LspI.
 
   
 0.815
Lrub_2174
Membrane bound lytic murein transglycosylase.
       0.765
lspD
Type II protein secretion LspD.
 
  
 0.714
Lrub_0010
General secretion pathway protein LspH.
 
   
 0.711
lepA-2
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.637
Lrub_2176
Signal peptidase I (lepB-1); Belongs to the peptidase S26 family.
       0.616
Lrub_2177
Transmembrane protein.
       0.610
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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