STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yghDPutative general secretion pathway protein YghD. (156 aa)    
Predicted Functional Partners:
Lrub_2173
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.998
lspI
Type II secretory pathway protein LspI.
 
   
 0.822
lspJ
Type II secretory pathway protein LspJ.
 
  
 0.819
lspK
Type II secretory pathway protein LspK.
 
  
 0.819
Lrub_0010
General secretion pathway protein LspH.
 
   
 0.709
lspD
Type II protein secretion LspD.
 
  
 0.709
Lrub_2174
Membrane bound lytic murein transglycosylase.
       0.629
Lrub_0575
Hypothetical protein.
  
     0.560
lvrA
Legionella vir region protein.
  
     0.556
Lrub_1702
Putative membrane protein YdgA-like protein.
  
     0.530
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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