STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
potASpermidine/putrescine ABC transporter, ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (364 aa)    
Predicted Functional Partners:
potD
Spermidine/putrescine-binding periplasmic protein precursor potD (SPBP); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 0.999
potC
Spermidine/putrescine ABC transporter permease PotC.
 
 0.999
potB
Spermidine/putrescine ABC transporter permease PotB.
 
 0.999
comA
DNA uptake/competence protein ComA.
     
 0.777
Lrub_2260
Neurogenic locus notch like protein precursor.
       0.750
ugpC
Sn-glycerol-3-phosphate transport, ATP binding protein; Belongs to the ABC transporter superfamily.
 
  
 
0.718
ugpA
Sn-glycerol-3-phosphate transmembrane ABC transporter.
 
  
 0.626
Lrub_2382
ABC transporter permease.
 
      0.607
ugpE
Sn-glycerol-3-phosphate transport system permease protein ugpE; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
  
 0.606
Lrub_2261
Transmembrane protein.
       0.560
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.