STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2322Ribose-phosphate pyrophosphokinase; Belongs to the ribose-phosphate pyrophosphokinase family. (362 aa)    
Predicted Functional Partners:
Lrub_1766
2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.
   
 0.973
Lrub_2324
Alcohol dehydrogenase.
  
   0.808
Lrub_0772
Thymidine phosphorylase.
 
  
  0.803
Lrub_2326
Thymidine phosphorylase.
 
  
  0.803
Lrub_1802
Thymidine phosphorylase.
 
  
  0.802
odpB
Pyruvate dehydrogenase E1 subunit beta.
   
 0.792
Lrub_2325
Metallo-beta-lactamase.
       0.780
copA1_2
Copper efflux ATPase.
       0.773
Lrub_2323
Cation transport ATPase.
       0.773
sucA
2-oxoglutarate dehydrogenase E1.
    
 0.770
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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