Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2328Sensory protein (PAS domain). (690 aa)    
Predicted Functional Partners:
Lrub_2329
Metal dependent phosphohydrolase.
     0.842
Lrub_2588
Guanylate cyclase.
 
  
  0.682
Lrub_2330
Hypothetical protein.
       0.671
Lrub_2783
Hypothetical protein.
  
     0.645
ribA
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.640
stuC_1
Sensor histidine kinase.
  
  
 0.635
Lrub_0793
Oxidoreductase, FAD-binding protein.
     
 0.634
Lrub_1756
Acid sphingomyelinase-like phosphodiesterase.
  
     0.624
Lrub_2331
Dot/Icm T4SS effector.
       0.607
smc_4
Chromosome partition protein Smc.
 
 
   0.598
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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