Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
grpBGlutamate rich protein GrpB. (319 aa)    
Predicted Functional Partners:
Lrub_2333
Multidrug resistance ABC transporter ATP binding protein.
 
     0.896
Lrub_0584
MerR family transcriptional regulator.
 
     0.659
Lrub_1504
GNAT family acetyltransferase.
 
    0.633
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
    0.585
aacA4
Aminoglycoside N(6')acetyltransferase.
  
     0.566
Lrub_1877
GNAT family acetyltransferase.
 
     0.556
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
     
 0.553
uup_2
ABC transporter ATP-binding protein Uup.
 
     0.546
Lrub_2726
GNAT family acetyltransferase.
 
    0.517
Lrub_1507
N-acetyltransferase GCN5.
 
    0.487
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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