STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2335Putative glycosyl transferase. (397 aa)    
Predicted Functional Partners:
rfbA
Phosphomannose isomerase GDP mannose pyrophosphorylase; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
 
 0.884
Lrub_2356
Hypothetical protein.
    
 
 0.811
ugd
UDP-glucose 6-dehydrogenase.
 
  
 0.690
wzt
ABC transporter of LPS O-antigen.
 
 
 0.638
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.577
Lrub_2519
Mannose-1-phosphate guanyltransferase.
  
 0.572
galU
Glucose-1-phosphate uridylyltransferase.
 
  
 0.567
Lrub_2842
O-antigen biosynthesis protein.
  
 
 0.553
Lrub_2405
Hypothetical protein.
 
 0.551
wzm
ABC transporter of LPS O-antigen, Wzm.
 
  
 0.528
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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