Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lrub_2356Hypothetical protein. (234 aa)    
Predicted Functional Partners:
dlpA
DlpA protein (isocitrate and isopropylmalate dehydrogenase family protein).
    
  0.894
Lrub_2358
Hypothetical protein.
       0.870
Lrub_2355
4-hydroxy-2-oxovalerate aldolase.
   
  0.837
Lrub_2354
UDP-N-acetylmuramyl tripeptide synthase.
       0.753
Lrub_0157
Erythromycin esterase.
   
    0.648
ypeA
Acetyltransferase YpeA.
       0.596
Lrub_2462
Phospholipase/carboxylesterase.
     
 0.548
Lrub_2352
GNAT family acetyltransferase.
       0.535
fadB
3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.
    
 0.531
yfcX
Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
    
 0.531
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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