STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bioIBiotin biosynthesis cytochrome P450. (404 aa)    
Predicted Functional Partners:
Lrub_2375
Pyoverdine biosynthesis protein PvcB.
 
  
 0.951
Lrub_0793
Oxidoreductase, FAD-binding protein.
  
 0.935
Lrub_2374
Pyoverdine biosynthesis protein PvcA.
 
     0.907
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.827
Lrub_0275
Hypothetical protein.
  
 0.802
Lrub_1438
2-acylglycerophosphoethanolamine acyltransferase.
  
 0.767
Lrub_2045
Sterol desaturase-related protein.
  
 0.730
Lrub_1299
6-hydroxynicotinate 3-monooxygenase precursor.
  
 0.707
Lrub_2660
Alkane monooxygenase.
 
  
 0.706
Lrub_0512
Potassium efflux system KefA.
  
 
 0.700
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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