Lrub_2383 protein (Legionella rubrilucens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Lrub_2383

ABC transporter ATP-binding protein. (308 aa)

Predicted Functional Partners:

Lrub_2382

0.997

Lrub_2384

0.965

Lrub_2441

0.728

msbA

0.664

Lrub_2333

0.648

gor

0.573

Lrub_2386

0.573

wzm

0.506

bioI

0.476

Lrub_2267

0.466

Your Current Organism:

Legionella rubrilucens

NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lrub_2267	Lrub_2333	Lrub_2267	Lrub_2333	Peptide ABC transporter permease.	Multidrug resistance ABC transporter ATP binding protein.	0.418
Lrub_2267	Lrub_2383	Lrub_2267	Lrub_2383	Peptide ABC transporter permease.	ABC transporter ATP-binding protein.	0.466
Lrub_2267	msbA	Lrub_2267	Lrub_1033	Peptide ABC transporter permease.	ABC transporter, ATP binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.418
Lrub_2333	Lrub_2267	Lrub_2333	Lrub_2267	Multidrug resistance ABC transporter ATP binding protein.	Peptide ABC transporter permease.	0.418
Lrub_2333	Lrub_2383	Lrub_2333	Lrub_2383	Multidrug resistance ABC transporter ATP binding protein.	ABC transporter ATP-binding protein.	0.648
Lrub_2333	bioI	Lrub_2333	Lrub_2376	Multidrug resistance ABC transporter ATP binding protein.	Biotin biosynthesis cytochrome P450.	0.483
Lrub_2382	Lrub_2383	Lrub_2382	Lrub_2383	ABC transporter permease.	ABC transporter ATP-binding protein.	0.997
Lrub_2382	Lrub_2384	Lrub_2382	Lrub_2384	ABC transporter permease.	Hemolysin D.	0.962
Lrub_2382	Lrub_2386	Lrub_2382	Lrub_2386	ABC transporter permease.	Transferase.	0.573
Lrub_2382	gor	Lrub_2382	Lrub_2385	ABC transporter permease.	Glutathione reductase.	0.573
Lrub_2382	wzm	Lrub_2382	Lrub_0631	ABC transporter permease.	ABC transporter of LPS O-antigen, Wzm.	0.626
Lrub_2383	Lrub_2267	Lrub_2383	Lrub_2267	ABC transporter ATP-binding protein.	Peptide ABC transporter permease.	0.466
Lrub_2383	Lrub_2333	Lrub_2383	Lrub_2333	ABC transporter ATP-binding protein.	Multidrug resistance ABC transporter ATP binding protein.	0.648
Lrub_2383	Lrub_2382	Lrub_2383	Lrub_2382	ABC transporter ATP-binding protein.	ABC transporter permease.	0.997
Lrub_2383	Lrub_2384	Lrub_2383	Lrub_2384	ABC transporter ATP-binding protein.	Hemolysin D.	0.965
Lrub_2383	Lrub_2386	Lrub_2383	Lrub_2386	ABC transporter ATP-binding protein.	Transferase.	0.573
Lrub_2383	Lrub_2441	Lrub_2383	Lrub_2441	ABC transporter ATP-binding protein.	ABC transporter permease.	0.728
Lrub_2383	bioI	Lrub_2383	Lrub_2376	ABC transporter ATP-binding protein.	Biotin biosynthesis cytochrome P450.	0.476
Lrub_2383	gor	Lrub_2383	Lrub_2385	ABC transporter ATP-binding protein.	Glutathione reductase.	0.573
Lrub_2383	msbA	Lrub_2383	Lrub_1033	ABC transporter ATP-binding protein.	ABC transporter, ATP binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.664