STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2390Amino acid (glutamine) ABC transporter ATP binding protein. (217 aa)    
Predicted Functional Partners:
Lrub_2389
Amino acid (glutamine) ABC transporter permease.
 
 0.998
yqiX
Amino acid (glutamine) ABC transporter periplasmic amino acid binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.997
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.925
argF
Ornithine carbamoyltransferase.
 
  
 0.909
argH
Argininosuccinate lyase.
 
  
 0.897
artJ
Arginine transport system periplasmic binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.875
Lrub_2132
Arginine ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.860
Lrub_2724
ABC transporter permease.
 
     0.811
Lrub_1078
Putative amino acid ABC transporter, periplasmic binding protein.
 
 0.780
argR
Arginine repressor; Regulates arginine biosynthesis genes.
     
 0.762
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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