STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
argGArgininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (406 aa)    
Predicted Functional Partners:
argH
Argininosuccinate lyase.
 
 
 0.999
argF
Ornithine carbamoyltransferase.
 
 
 0.999
carB
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
 
 
 0.980
argD
Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
 
 
 0.975
argR
Arginine repressor; Regulates arginine biosynthesis genes.
  
  
 0.954
Lrub_1878
Acetylornithine deacetylase.
  
 0.925
Lrub_2390
Amino acid (glutamine) ABC transporter ATP binding protein.
  
  
 0.903
lysAC
Bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.850
Lrub_2389
Amino acid (glutamine) ABC transporter permease.
  
  
 0.847
Lrub_2165
Oxidoreductase.
    
  0.845
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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