STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2400DNA nickase. (149 aa)    
Predicted Functional Partners:
frmA
Alcohol dehydrogenase.
 
     0.808
Lrub_2399
Hypothetical protein.
       0.565
Lrub_2402
WavE lipopolysaccharide synthesis.
       0.483
glmU_1
Bifunctional protein GlmU.
       0.483
Lrub_2404
Hypothetical protein.
       0.448
Lrub_2405
Hypothetical protein.
       0.448
Lrub_2071
Hemerythrin HHE cation binding domain protein.
  
   
 0.439
Lrub_2406
PRC-barrel domain protein.
 
     0.426
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.