Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
frmAAlcohol dehydrogenase. (390 aa)    
Predicted Functional Partners:
Lrub_2400
DNA nickase.
 
     0.808
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.721
phaB_1
Acetyoacetyl CoA reductase.
  
  
  0.666
Lrub_1766
2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.
  
 
 0.637
Lrub_0793
Oxidoreductase, FAD-binding protein.
  
 
 0.624
petC_2
Cytochrome b6-f complex iron-sulfur subunit.
 
  
 0.599
Lrub_2399
Hypothetical protein.
       0.553
Lrub_1065
Aminotransferase class-III.
  
 0.532
Lrub_1016
Putative hydrolase.
    
  0.525
Lrub_0484
Eukaryotic DNA topoisomerase I, catalytic core.
  
     0.514
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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