STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2440ABC transporter ATP binding protein. (304 aa)    
Predicted Functional Partners:
Lrub_2441
ABC transporter permease.
 
 0.987
Lrub_2382
ABC transporter permease.
 
 
 0.958
msbA
ABC transporter, ATP binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
0.685
Lrub_2333
Multidrug resistance ABC transporter ATP binding protein.
 
 
0.648
Lrub_2439
2OG-Fe(II) oxygenase.
       0.629
wzm
ABC transporter of LPS O-antigen, Wzm.
    
 0.506
Lrub_2438
Hypothetical protein.
       0.502
bioI
Biotin biosynthesis cytochrome P450.
    
 0.476
Lrub_2267
Peptide ABC transporter permease.
    
 0.466
Lrub_2265
Extracellular solute-binding protein.
    
 0.460
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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