STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2471Phage shock protein C, PspC. (71 aa)    
Predicted Functional Partners:
gacS/letS
Transmission sensor LetS.
   
 
 0.978
Lrub_0131
Regulatory protein (GGDEF and EAL domains).
   
 
 0.969
Lrub_0394
Sensor histidine kinase.
   
 
 0.969
Lrub_0166
Sensory box histidine kinase/response regulator.
   
 
 0.653
Lrub_1578
Hypothetical protein.
  
  
 0.630
Lrub_1768
Inner membrane protein/sensory box protein LssE.
    
   0.605
Lrub_1872
Sensory box histidine kinase/response regulator.
   
 
 0.442
pilS
Sensor protein PilS.
   
   0.403
Lrub_0338
Sensor protein LuxN.
   
   0.403
Lrub_1128
Sensor kinase HydH.
   
   0.403
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.