STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2541Hypothetical protein; Alpha-2-macroglobulin family N-terminal region. (1919 aa)    
Predicted Functional Partners:
pbpC
Penicillin binding protein 1C.
   
 0.967
Lrub_2378
Hypothetical protein.
  
     0.604
Lrub_0657
Lipase.
     
 0.582
Lrub_2016
IcmF.
  
    0.498
yjeA
Endo-1,4-beta-xylanase.
  
 
   0.491
iraA
Small-molecule methyltransferase IraA.
  
     0.488
Lrub_2783
Hypothetical protein.
  
     0.475
Lrub_1753
Hypothetical protein.
  
     0.439
Lrub_2017
IcmH (DotU).
  
    0.439
Lrub_0642
Hypothetical protein.
  
     0.418
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.