ahpC protein (Legionella rubrilucens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ahpC

Alkyl hydroperoxide reductase. (201 aa)

Predicted Functional Partners:

grlA

0.841

Lrub_2585

0.824

trxB

0.737

dnaK

0.691

Lrub_1670

0.671

ccmG

0.671

Lrub_2679

0.671

sodC

0.670

Lrub_1032

0.654

fur

0.647

Your Current Organism:

Legionella rubrilucens

NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lrub_1032	Lrub_1670	Lrub_1032	Lrub_1670	Thioredoxin reductase.	Hypothetical protein.	0.609
Lrub_1032	Lrub_2679	Lrub_1032	Lrub_2679	Thioredoxin reductase.	Thiol-disulfide oxidoreductase.	0.609
Lrub_1032	ahpC	Lrub_1032	Lrub_2583	Thioredoxin reductase.	Alkyl hydroperoxide reductase.	0.654
Lrub_1032	ccmG	Lrub_1032	Lrub_2284	Thioredoxin reductase.	Cytochrome C biogenesis protein.	0.609
Lrub_1032	trxB	Lrub_1032	Lrub_1124	Thioredoxin reductase.	Thioredoxin reductase.	0.813
Lrub_1670	Lrub_1032	Lrub_1670	Lrub_1032	Hypothetical protein.	Thioredoxin reductase.	0.609
Lrub_1670	ahpC	Lrub_1670	Lrub_2583	Hypothetical protein.	Alkyl hydroperoxide reductase.	0.671
Lrub_1670	dnaK	Lrub_1670	Lrub_0926	Hypothetical protein.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.706
Lrub_1670	sodC	Lrub_1670	Lrub_2025	Hypothetical protein.	Superoxide dismutase, Cu, Zn.	0.441
Lrub_1670	trxB	Lrub_1670	Lrub_1124	Hypothetical protein.	Thioredoxin reductase.	0.609
Lrub_2585	ahpC	Lrub_2585	Lrub_2583	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Alkyl hydroperoxide reductase.	0.824
Lrub_2585	dnaK	Lrub_2585	Lrub_0926	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.494
Lrub_2585	grlA	Lrub_2585	Lrub_2584	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Glutaredoxin-like protein; Belongs to the glutaredoxin family. Monothiol subfamily.	0.803
Lrub_2585	sodC	Lrub_2585	Lrub_2025	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Superoxide dismutase, Cu, Zn.	0.985
Lrub_2585	trxB	Lrub_2585	Lrub_1124	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Thioredoxin reductase.	0.441
Lrub_2679	Lrub_1032	Lrub_2679	Lrub_1032	Thiol-disulfide oxidoreductase.	Thioredoxin reductase.	0.609
Lrub_2679	ahpC	Lrub_2679	Lrub_2583	Thiol-disulfide oxidoreductase.	Alkyl hydroperoxide reductase.	0.671
Lrub_2679	dnaK	Lrub_2679	Lrub_0926	Thiol-disulfide oxidoreductase.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.706
Lrub_2679	sodC	Lrub_2679	Lrub_2025	Thiol-disulfide oxidoreductase.	Superoxide dismutase, Cu, Zn.	0.441
Lrub_2679	trxB	Lrub_2679	Lrub_1124	Thiol-disulfide oxidoreductase.	Thioredoxin reductase.	0.609