Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lrub_2587Metal-dependent hydrolase of the beta-lactamase superfamily transporter III. (254 aa)    
Predicted Functional Partners:
Lrub_2588
Guanylate cyclase.
 
   
 0.896
Lrub_2589
Hypothetical protein.
       0.581
Lrub_2009
Protein IcmE (DotG).
  
     0.574
Lrub_2068
Regulatory protein (GGDEF and EAL domains).
 
     0.556
Lrub_2591
Sulfate transporter.
 
  
 0.555
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
    0.501
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
 
  
 0.474
comA
DNA uptake/competence protein ComA.
       0.467
Lrub_2590
FecR protein.
       0.449
Lrub_0426
Hypothetical protein.
  
 
   0.429
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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