Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
Lrub_2592Esterase. (341 aa)    
Predicted Functional Partners:
Lrub_2591
Sulfate transporter.
    
  0.828
phbC_2
Polyhydroxyalkanoic synthase.
  
     0.710
phbC_1
Polyhydroxyalkanoic synthase.
  
     0.709
Lrub_1722
Poly-beta-hydroxybutyrate polymerase.
  
     0.675
Lrub_0136
Poly(3-hydroxybutyrate) depolymerase.
  
     0.584
Lrub_2590
FecR protein.
       0.574
Lrub_1715
Putative Polyhydroxyalkanoate synthesis repressor PhaR.
 
     0.538
Lrub_2593
Hypothetical protein.
       0.535
Lrub_1680
Virulence protein.
    
   0.523
Lrub_1438
2-acylglycerophosphoethanolamine acyltransferase.
    
  0.494
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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