STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2606Cysteine protease. (367 aa)    
Predicted Functional Partners:
Lrub_2608
Putative helicase/relaxase.
 
     0.857
Lrub_1306
Secreted protein.
 
  
 0.787
Lrub_1566
Protein-tyrosine phosphatase.
  
     0.769
Lrub_2009
Protein IcmE (DotG).
  
     0.769
lvrA
Legionella vir region protein.
  
     0.763
Lrub_0298
DotA.
  
     0.762
Lrub_1832
Protein LvrA.
  
     0.749
Lrub_1756
Acid sphingomyelinase-like phosphodiesterase.
  
    0.748
Lrub_0905
Zip family transporter.
  
     0.743
Lrub_2016
IcmF.
  
     0.740
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.