Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lrub_2660Alkane monooxygenase. (349 aa)    
Predicted Functional Partners:
Lrub_0793
Oxidoreductase, FAD-binding protein.
  
 
 0.937
Lrub_2324
Alcohol dehydrogenase.
     
  0.839
Lrub_0449
Alcohol dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.838
Lrub_2045
Sterol desaturase-related protein.
 
 
 0.807
fadH
2,4-dienoyl-CoA reductase FadH1.
  
   
 0.745
rsmI
Tetrapyrrole (corrin/porphyrin) methylase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.744
bioI
Biotin biosynthesis cytochrome P450.
 
  
 0.706
Lrub_2661
Metalloproteinase-like protein.
       0.633
rubR
Rubredoxin.
 
 
 0.586
Lrub_2662
Hypothetical protein.
       0.580
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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