STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2684Integral membrane protein. (323 aa)    
Predicted Functional Partners:
Lrub_2686
Alpha helix protein; Belongs to the UPF0307 family.
       0.805
rlmL
Ribosomal RNA large subunit methyltransferase L; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
       0.805
lvrA
Legionella vir region protein.
  
     0.670
plaA
Lysophospholipase A.
       0.651
Lrub_2606
Cysteine protease.
  
     0.571
Lrub_2682
Pirin-like protein; Belongs to the pirin family.
       0.567
wrbA_2
Flavoprotein WrbA (Trp repressor binding protein).
       0.567
Lrub_1832
Protein LvrA.
  
     0.555
Lrub_0298
DotA.
  
     0.543
Lrub_1566
Protein-tyrosine phosphatase.
  
     0.537
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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