Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lrub_2693Hypothetical protein; Belongs to the UPF0753 family. (777 aa)    
Predicted Functional Partners:
Lrub_2692
NADH-ubiquinone oxidoreductase chain 5.
 
 0.992
Lrub_2694
Hypothetical protein.
     0.976
nuoL
NADH-quinone oxidoreductase chain L.
  
 
 0.894
Lrub_2688
Outer membrane component of multidrug efflux pump.
 
     0.870
Lrub_2689
Putative membrane fusion protein.
 
     0.844
Lrub_2690
Toxin secretion ABC transporter ATP-binding protein.
 
     0.806
Lrub_2691
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.792
Lrub_1042
Sulfate transporter.
 
    0.728
Lrub_0415
Carbonic anhydrase Mig5.
  
    0.614
Lrub_1963
Deoxyribodipyrimidine photolyase-related protein.
  
     0.567
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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