STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2718Xaa-Pro aminopeptidase. (435 aa)    
Predicted Functional Partners:
ubiH_1
2-octaprenyl-6-methoxyphenol hydroxylase.
     
 0.898
ubiH_2
2-polyprenyl-6-methoxyphenol hydroxylase.
     
 0.891
Lrub_2717
Hypothetical protein; Belongs to the UPF0149 family.
     
 0.822
Lrub_2721
Outer membrane efflux protein.
       0.788
Lrub_2723
ABC transporter ATP-binding protein.
       0.788
Lrub_2722
Membrane-fusion protein AcrA.
       0.771
zapA
Cell division protein ZapA.
     
 0.769
Lrub_2724
ABC transporter permease.
       0.678
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
  
 0.579
etfA
Electron transfer flavoprotein subunit alpha.
    
  0.578
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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