STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2723ABC transporter ATP-binding protein. (231 aa)    
Predicted Functional Partners:
Lrub_2724
ABC transporter permease.
 0.999
Lrub_0352
ABC transporter permease.
 
 0.944
lolC
Lipoprotein-releasing system transmembrane protein lolC.
  
 0.934
Lrub_2722
Membrane-fusion protein AcrA.
 
 
 0.899
Lrub_2721
Outer membrane efflux protein.
   
   0.856
lolA
Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.814
ubiH_2
2-polyprenyl-6-methoxyphenol hydroxylase.
       0.684
Lrub_2718
Xaa-Pro aminopeptidase.
       0.673
ubiH_1
2-octaprenyl-6-methoxyphenol hydroxylase.
       0.673
Lrub_2717
Hypothetical protein; Belongs to the UPF0149 family.
       0.589
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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