Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lrub_0078 | Lrub_2804 | Lrub_0078 | Lrub_2804 | DNA-binding protein. | Cytochrome oxidase-like protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.724 |
Lrub_0872 | Lrub_1438 | Lrub_0872 | Lrub_1438 | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | 2-acylglycerophosphoethanolamine acyltransferase. | 0.711 |
Lrub_0872 | Lrub_2804 | Lrub_0872 | Lrub_2804 | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | Cytochrome oxidase-like protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.596 |
Lrub_0872 | psd | Lrub_0872 | Lrub_2631 | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). | 0.402 |
Lrub_0872 | pssA | Lrub_0872 | Lrub_0843 | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | CDP-diacylglycerol-serine O-phosphatidyltransferase (phosphatidylserine synthase); Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.636 |
Lrub_1438 | Lrub_0872 | Lrub_1438 | Lrub_0872 | 2-acylglycerophosphoethanolamine acyltransferase. | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | 0.711 |
Lrub_1438 | Lrub_2804 | Lrub_1438 | Lrub_2804 | 2-acylglycerophosphoethanolamine acyltransferase. | Cytochrome oxidase-like protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.619 |
Lrub_1438 | merA1_2 | Lrub_1438 | Lrub_2801 | 2-acylglycerophosphoethanolamine acyltransferase. | Mercuric reductase. | 0.679 |
Lrub_1438 | psd | Lrub_1438 | Lrub_2631 | 2-acylglycerophosphoethanolamine acyltransferase. | Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). | 0.773 |
Lrub_1438 | pssA | Lrub_1438 | Lrub_0843 | 2-acylglycerophosphoethanolamine acyltransferase. | CDP-diacylglycerol-serine O-phosphatidyltransferase (phosphatidylserine synthase); Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.686 |
Lrub_2802 | Lrub_2804 | Lrub_2802 | Lrub_2804 | Methionine sulfoxide reductase B. | Cytochrome oxidase-like protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.682 |
Lrub_2802 | Lrub_2805 | Lrub_2802 | Lrub_2805 | Methionine sulfoxide reductase B. | Avirulence protein. | 0.462 |
Lrub_2802 | merA1_2 | Lrub_2802 | Lrub_2801 | Methionine sulfoxide reductase B. | Mercuric reductase. | 0.780 |
Lrub_2802 | msrA-2 | Lrub_2802 | Lrub_2803 | Methionine sulfoxide reductase B. | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.997 |
Lrub_2804 | Lrub_0078 | Lrub_2804 | Lrub_0078 | Cytochrome oxidase-like protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | DNA-binding protein. | 0.724 |
Lrub_2804 | Lrub_0872 | Lrub_2804 | Lrub_0872 | Cytochrome oxidase-like protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | 0.596 |
Lrub_2804 | Lrub_1438 | Lrub_2804 | Lrub_1438 | Cytochrome oxidase-like protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 2-acylglycerophosphoethanolamine acyltransferase. | 0.619 |
Lrub_2804 | Lrub_2802 | Lrub_2804 | Lrub_2802 | Cytochrome oxidase-like protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Methionine sulfoxide reductase B. | 0.682 |
Lrub_2804 | Lrub_2805 | Lrub_2804 | Lrub_2805 | Cytochrome oxidase-like protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Avirulence protein. | 0.549 |
Lrub_2804 | merA1_2 | Lrub_2804 | Lrub_2801 | Cytochrome oxidase-like protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Mercuric reductase. | 0.851 |
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