Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_2821Hypothetical protein. (393 aa)    
Predicted Functional Partners:
Lrub_2822
Hypothetical protein.
       0.780
Lrub_1255
Putative N-hydroxyarylamine O-acetyltransferase.
  
     0.718
Lrub_1469
Ankyrin repeats (3 copies).
  
     0.707
Lrub_2574
Ankyrin repeat-containing protein.
  
     0.687
Lrub_2820
Putative Cytochrome c, class I precursor.
       0.682
Lrub_1424
Ankyrin 3.
  
     0.670
Lrub_0540
L-gulono-gamma-lactone oxidase.
  
     0.658
Lrub_1540
Acid sphingomyelinase-like phosphodiesterase.
  
     0.653
Lrub_1910
Coiled-coil protein.
  
     0.631
Lrub_1879
Protein phosphatase 2C.
  
     0.628
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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