Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
abcT3ABC transporter ATP binding protein. (430 aa)    
Predicted Functional Partners:
Lrub_2826
ABC transporter permease.
 
   
 0.976
glnK
Carbamoylphosphate synthase large subunit; Belongs to the P(II) protein family.
    
 
 0.647
Lrub_2375
Pyoverdine biosynthesis protein PvcB.
  
 
 0.602
soj
Sporulation initiation inhibitor protein Soj.
       0.547
Lrub_2823
Hypothetical protein.
       0.546
parB_4
Chromosome partitioning protein ParB; Belongs to the ParB family.
       0.543
Lrub_0121
Flavin reductase like domain protein.
  
 
 0.535
ugpB
Glycerol-3-phosphate-binding periplasmic protein precursor.
    
  0.467
ugpA
Sn-glycerol-3-phosphate transmembrane ABC transporter.
    
  0.443
ugpE
Sn-glycerol-3-phosphate transport system permease protein ugpE; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
    
  0.443
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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