STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcT3ABC transporter ATP binding protein. (430 aa)    
Predicted Functional Partners:
Lrub_2826
ABC transporter permease.
 
   
 0.971
Lrub_2375
Pyoverdine biosynthesis protein PvcB.
  
 
  0.672
Lrub_0121
Flavin reductase like domain protein.
  
 
 0.606
ugpC
Sn-glycerol-3-phosphate transport, ATP binding protein; Belongs to the ABC transporter superfamily.
  
  
 
0.555
soj
Sporulation initiation inhibitor protein Soj.
       0.551
parB_4
Chromosome partitioning protein ParB; Belongs to the ParB family.
       0.543
ugpB
Glycerol-3-phosphate-binding periplasmic protein precursor.
    
  0.531
ugpA
Sn-glycerol-3-phosphate transmembrane ABC transporter.
    
  0.524
ugpE
Sn-glycerol-3-phosphate transport system permease protein ugpE; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
   
  0.518
potC
Spermidine/putrescine ABC transporter permease PotC.
    
  0.430
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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