STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCCL_0086ABC transporter, ATP-binding protein homolog. (223 aa)    
Predicted Functional Partners:
MCCL_0087
Conserved hypothetical protein; Similar to ABC transporter, permease protein.
 
 0.991
MCCL_0089
Conserved hypothetical protein; Similar to two-component sensor kinase protein.
 
 
 0.815
MCCL_0113
Conserved hypothetical protein; Similar to ABC transporter permease.
 
 0.801
MCCL_0283
Conserved hypothetical protein; Similar to ABC transporter, permease protein.
  
 
 0.740
MCCL_0088
Conserved hypothetical protein; Similar to two-component response regulator.
     
 0.729
MCCL_0311
Conserved hypothetical protein; Similar to functionally unknown protein.
  
 
 0.626
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.561
trxB
Thioredoxin reductase.
 
    0.526
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
   
 0.506
pheS
phenylalanyl-tRNA synthetase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 
   0.466
Your Current Organism:
Macrococcus caseolyticus
NCBI taxonomy Id: 458233
Other names: M. caseolyticus JCSC5402, Macrococcus caseolyticus JCSC5402, Macrococcus caseolyticus str. JCSC5402, Macrococcus caseolyticus strain JCSC5402
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