Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCCL_0282ABC transporter ATP-binding protein. (249 aa)    
Predicted Functional Partners:
MCCL_0283
Conserved hypothetical protein; Similar to ABC transporter, permease protein.
 
 0.999
MCCL_0281
Sensor histidine kinase.
 
 
 0.991
MCCL_0280
Two-component response regulator.
 
   
 0.846
MCCL_0087
Conserved hypothetical protein; Similar to ABC transporter, permease protein.
  
 
 0.765
MCCL_0113
Conserved hypothetical protein; Similar to ABC transporter permease.
  
 
 0.713
MCCL_0311
Conserved hypothetical protein; Similar to functionally unknown protein.
  
 
 0.493
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.402
Your Current Organism:
Macrococcus caseolyticus
NCBI taxonomy Id: 458233
Other names: M. caseolyticus JCSC5402, Macrococcus caseolyticus JCSC5402, Macrococcus caseolyticus str. JCSC5402, Macrococcus caseolyticus strain JCSC5402
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