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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCCL_0350Hypothetical protein; Belongs to the RbsD / FucU family. (208 aa)    
Predicted Functional Partners:
rbsK
Ribokinase homolog; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.952
MCCL_0348
Conserved hypothetical protein; Similar to transcriptional repressor of ribose operon.
 
  
 0.892
MCCL_0351
Conserved hypothetical protein; Converts alpha-aldose to the beta-anomer.
 
  
 0.859
MCCL_0374
Conserved hypothetical protein; Similar to fructokinase.
 
  
 0.740
MCCL_0332
Conserved hypothetical protein; Similar to sugar kinase family protein; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.710
MCCL_0277
Sugar-binding transcriptional regulator LacI family protein.
 
  
 0.487
ccpA
Catabolite control protein A.
 
  
 0.482
MCCL_0372
Conserved hypothetical protein; Similar to transcriptional regulator.
 
  
 0.453
MCCL_0356
Conserved hypothetical protein; Similar to transcriptional regulator.
 
  
 0.450
MCCL_0347
Conserved hypothetical protein; Similar to transcriptional regulator, XRE family.
       0.425
Your Current Organism:
Macrococcus caseolyticus
NCBI taxonomy Id: 458233
Other names: M. caseolyticus JCSC5402, Macrococcus caseolyticus JCSC5402, Macrococcus caseolyticus str. JCSC5402, Macrococcus caseolyticus strain JCSC5402
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