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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCCL_0474ABC-type transporter periplasmic glycine betaine choline-binding protein homolog. (504 aa)    
Predicted Functional Partners:
MCCL_0473
ABC transporter ATP-binding protein homolog.
 0.999
opuCA
Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein.
 0.998
opuCC
Glycine betaine/carnitine/choline ABC-type transporter, substrate-binding protein.
 
 
0.956
opuCB
Glycine betaine/carnitine/choline ABC transporter, permease protein.
 
 
0.951
opuCD
Glycine betaine/carnitine/choline ABC transporter, permease protein.
 
 
0.950
MCCL_0471
ABC transporter ATP-binding protein homolog.
       0.705
recQ
ATP-dependent DNA helicase RecQ.
       0.705
hisC
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
       0.598
MCCL_1584
Glutamine-binding periplasmic protein homolog.
     
 0.564
MCCL_0470
Conserved hypothetical protein; Similar to divalent heavy-metal cations transporter.
       0.527
Your Current Organism:
Macrococcus caseolyticus
NCBI taxonomy Id: 458233
Other names: M. caseolyticus JCSC5402, Macrococcus caseolyticus JCSC5402, Macrococcus caseolyticus str. JCSC5402, Macrococcus caseolyticus strain JCSC5402
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