STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rocDOrnithine aminotransferase; Catalyzes the interconversion of ornithine to glutamate semialdehyde. (397 aa)    
Predicted Functional Partners:
MCCL_0318
Arginase homolog; Belongs to the arginase family.
 0.987
MCCL_0582
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.981
argH
Argininosuccinate lyase.
 
  
 0.901
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 
 0.891
gudB
NAD-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
  
 0.751
argR
Arginine repressor; Regulates arginine biosynthesis genes.
  
  
 0.681
pyrAB
Carbamoyl-phosphate synthase large chain.
  
  
 0.656
moaA
Molybdenum cofactor biosynthesis protein MoaA homolog; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
 
      0.558
MCCL_1572
GCN5-related N-acetyltransferase homolog; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase homolog.
  
  
 0.555
MCCL_1451
Conserved hypothetical protein; Similar to proline dehydrogenase.
 
  
 0.553
Your Current Organism:
Macrococcus caseolyticus
NCBI taxonomy Id: 458233
Other names: M. caseolyticus JCSC5402, Macrococcus caseolyticus JCSC5402, Macrococcus caseolyticus str. JCSC5402, Macrococcus caseolyticus strain JCSC5402
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