STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppDOligopeptide ABC transporter ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (357 aa)    
Predicted Functional Partners:
oppB
Oligopeptide ABC transporter permease protein OppB.
 0.999
oppC
Oligopeptide ABC transporter permease protein OppC homolog.
 
 0.999
oppF
Oligopeptide ABC transporter ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
0.998
MCCL_0609
Oligopeptide ABC transporter OppA oligopeptide-binding protein homolog.
 
 
 0.996
MCCL_0549
Conserved hypothetical protein; Similar to amino acid ABC transporter ATP-binding protein.
 
     
0.856
Your Current Organism:
Macrococcus caseolyticus
NCBI taxonomy Id: 458233
Other names: M. caseolyticus JCSC5402, Macrococcus caseolyticus JCSC5402, Macrococcus caseolyticus str. JCSC5402, Macrococcus caseolyticus strain JCSC5402
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.