Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCCL_1107Conserved hypothetical protein; Similar to pyrophosphatase. (105 aa)    
Predicted Functional Partners:
MCCL_1106
Lipopolysaccharide biosynthesis-related pr-like protein homolog.
 
  
 0.874
MCCL_1105
Conserved hypothetical protein; Similar to putative poly(A) polymerase.
  
    0.848
dinG
Conserved hypothetical protein; 3'-5' exonuclease.
  
    0.836
birA
Conserved hypothetical protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.827
dnaD
Chromosome replication initiation protein dnaD.
 
     0.761
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
  
    0.694
asnS
asparaginyl-tRNA synthetase.
     
 0.639
MCCL_1108
Conserved hypothetical protein; Similar to functionally unknown protein.
       0.582
nth
Endonuclease III homolog; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.475
MCCL_1099
Conserved hypothetical protein; Similar to functionally unknown protein.
       0.418
Your Current Organism:
Macrococcus caseolyticus
NCBI taxonomy Id: 458233
Other names: M. caseolyticus JCSC5402, Macrococcus caseolyticus JCSC5402, Macrococcus caseolyticus str. JCSC5402, Macrococcus caseolyticus strain JCSC5402
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