STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpCPenicillin-binding protein 3. (684 aa)    
Predicted Functional Partners:
pbpB
Penicillin-binding protein 2.
 
 
 0.977
pbpD
Penicillin-binding protein 4; Belongs to the peptidase S11 family.
  
 
 0.948
MCCL_1605
Conserved hypothetical protein; Similar to transglycosylase domain protein.
   
 0.943
pbpA
Penicillin-binding protein 1.
  
  
0.938
MCCL_1742
Rod shape determining protein RodA; Belongs to the SEDS family.
 
 0.922
MCCL_1644
Conserved hypothetical protein; Similar to D-alanyl-D-alanine carboxypeptidase.
     
 0.907
MCCL_1645
Conserved hypothetical protein; Similar to D-alanyl-D-alanine carboxypeptidase.
     
 0.907
MCCL_1287
Conserved hypothetical protein; Involved in formation and maintenance of cell shape.
 
 
 0.885
MCCL_0728
FtsW/RodA/SpoVE family cell division protein homolog; Belongs to the SEDS family.
 
 0.853
divIB
Conserved hypothetical protein; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.
 
 
 0.852
Your Current Organism:
Macrococcus caseolyticus
NCBI taxonomy Id: 458233
Other names: M. caseolyticus JCSC5402, Macrococcus caseolyticus JCSC5402, Macrococcus caseolyticus str. JCSC5402, Macrococcus caseolyticus strain JCSC5402
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.