Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCCL_1238Conserved hypothetical protein; Similar to DNA internalization-related competence protein ComEC/Rec2. (743 aa)    
Predicted Functional Partners:
comEB
Late competence operon required for DNA binding and uptake ComEB.
  
  
 0.942
MCCL_1240
Conserved hypothetical protein; Similar to competence protein comEA.
 
  
 0.926
MCCL_1295
Conserved hypothetical protein; Similar to aspartic endopeptidase.
 
  
 0.877
MCCL_0833
Conserved hypothetical protein; Similar to DNA processing Smf protein.
 
  
 0.861
MCCL_1186
Conserved hypothetical protein; Similar to DNA transport machinery protein comGB.
 
  
 0.841
MCCL_0377
Conserved hypothetical protein; Similar to ATP-dependent DNA helicase RecQ.
  
  
 0.836
MCCL_1187
Conserved hypothetical protein; Similar to late competence protein comGA.
 
  
 0.818
MCCL_1185
Exogenous DNA-binding protein comGC homolog; Required for transformation and DNA binding.
   
  
 0.779
MCCL_1184
Conserved hypothetical protein; Similar to comG operon protein 4.
  
  
 0.775
MCCL_0500
Conserved hypothetical protein; Similar to late competence operon protein FC.
 
  
 0.773
Your Current Organism:
Macrococcus caseolyticus
NCBI taxonomy Id: 458233
Other names: M. caseolyticus JCSC5402, Macrococcus caseolyticus JCSC5402, Macrococcus caseolyticus str. JCSC5402, Macrococcus caseolyticus strain JCSC5402
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