STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCCL_143216S pseudouridylate synthase homolog; Belongs to the pseudouridine synthase RsuA family. (234 aa)    
Predicted Functional Partners:
MCCL_1433
Conserved hypothetical protein; Similar to polysaccharide biosynthesis protein.
  
    0.884
MCCL_1431
Conserved hypothetical protein; Similar to functionally unknown protein.
       0.743
MCCL_1434
Conserved hypothetical protein; Similar to functionally unknown protein.
  
    0.687
cmk
Cytidylate kinase.
 
  
 0.570
der
GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.536
MCCL_1430
Conserved hypothetical protein; Similar to peptidase.
       0.486
MCCL_1143
Conserved hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.473
trmB
tRNA (guanine-N(7)-)-methyltransferase homolog; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.431
MCCL_1089
Conserved hypothetical protein; Similar to functionally unknown protein.
  
  
 0.412
Your Current Organism:
Macrococcus caseolyticus
NCBI taxonomy Id: 458233
Other names: M. caseolyticus JCSC5402, Macrococcus caseolyticus JCSC5402, Macrococcus caseolyticus str. JCSC5402, Macrococcus caseolyticus strain JCSC5402
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